miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|122031420|gb|EH420285.1|EH420285 CATCTCCAAGATTCGATCTCTTTAGGTTTTTTCATATATGGTTACCAAAAGATTTATAATTTAAGGAAAAGACTCTGTTT
TTCAAAAGAAGAAATGCAGGATCCATCAGCTTATTACAACTCGATGATGGCGACACAACAACAACAACAACCACAGCAGT
TTCCAGAGCAAGAACAGCTAAAGTGTCCTCGATGTGACTCACCGAACACAAAATTCTGTTACTACAACAACTACAACCTG
TCACAGCCCCGTCACTTTTGCAAAAGCTGCCGTCGTTACTGGACCAAAGGCGGGGCTCTCCGCAACGTTCCCGTCGGCGG
CGGTTCTCGCAAGAACGCTAAACGATCAACCTCTGCGTCTTCTCCTCCCAACACACACAAGAAGAAGACCAAACACCCGG
ACCCGGATACGGATCCGATCCGGATGCTGTACGGGTTACCGATCGGAGACCAAGACGTGAAAGGTATGGAGATGGGTGGT
GGTGGGAGTTTTAGCTCGCTTTTGGCGTCGAATATGCAGTTGGGTCTTGGTGGGATCATCCTAGACGGGTCGGGCTGGGA
TCCGGGTATGGGACTAAAGAGGAGTGAAGCGGGTGACGAAGGTGGTGGTAACCCGTGGACCGATCTTTCTAGGAACAGAG
TGGAGAAAAACTGAAGGAT




Most similar to sp|Q94AR6|DOF31_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q94AR6|DOF31_ARATH Dof zinc finger protein DOF3.1 OS=Arabidopsis
           thaliana GN=DOF3.1 PE=2 SV=2
          Length = 204

 Score =  211 bits (537), Expect = 3e-54
 Identities = 120/207 (57%), Positives = 129/207 (62%), Gaps = 21/207 (10%)
 Frame = +1

Query: 94  MQDPSAYYNSMMATXXXXXXXXXXXXXXLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCR 273
           MQDP+AYY +MMA               LKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCR
Sbjct: 1   MQDPAAYYQTMMAKQQQQQQPQFAEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCR 60

Query: 274 RYWTKGGALRNVPVGGGSRKNA-KRSTSASSP---------------PNXXXXXXXXXXX 405
           RYWTKGGALRNVPVGGGSRKNA KRSTS+SS                P+           
Sbjct: 61  RYWTKGGALRNVPVGGGSRKNATKRSTSSSSSASSPSNSSQNKKTKNPDPDPDPRNSQKP 120

Query: 406 XXXXIRMLYGLPIGDQDVKXXXXXXXXSFSSLLASNMQ--XXXXXXXXDGSGWD-PGM-- 570
                RMLYG PIGDQDVK        SFSSLLA+NMQ          DGSGWD PGM  
Sbjct: 121 DLDPTRMLYGFPIGDQDVK--GMEIGGSFSSLLANNMQLGLGGGGIMLDGSGWDHPGMGL 178

Query: 571 GLKRSEAGDEGGGNPWTDLSRNRVEKN 651
           GL+R+E G+    NPWTDL+ NR EKN
Sbjct: 179 GLRRTEPGN-NNNNPWTDLAMNRAEKN 204